For a 2-year physical therapy program at a community college, the cost for tuition and fees are likely to run from $7,000 - 10,000. For a 2 1/2 year doctoral program at a private university, a student may incur over $100,000 in costs. Physical therapy programs vary by masters or doctorate degrees. So When deciding on a physical therapy school, it is important to choose a program that is accredited by the American Physical Therapy Association.